Integrated Publishing Toolkit(IPT)

free and open access to biodiversity data

Marine Microbes from RV Southern Surveyor voyage SS2012_T06, Australia (2012)

Latest version published by CSIRO Oceans and Atmosphere on Jun 20, 2020 CSIRO Oceans and Atmosphere

This dataset was acquired on the RV Southern Surveyor voyage SS2012_T06. The aim was to characterize the bacterial community structure in surface waters along a 2500 km transect in the eastern Indian Ocean Full details of data, reports and publications of the voyage is at http://www.marine.csiro.au/data/trawler/survey_details.cfm?survey=SS2012_T06

Data Records

The data in this sampling event resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 14 records. 2 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

  • Event (core)
    14
  • Occurrence 
    3477
  • ExtendedMeasurementOrFact 
    148

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 14 records in English (80 KB) - Update frequency: not planned
Metadata as an EML file download in English (8 KB)
Metadata as an RTF file download in English (8 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Please see https://www.australianmicrobiome.com/protocols/acknowledgements/ for citation examples and links to the data policy.

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is CSIRO Oceans and Atmosphere. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has not been registered with GBIF

Keywords

Samplingevent

Contacts

Who created the resource:

Eric Raes
Principal Investigator
CSIRO Oceans and Atmosphere Hobart Tasmania AU

Who can answer questions about the resource:

Eric Raes
Principal Investigator
CSIRO Oceans and Atmosphere Hobart Tasmania AU

Who filled in the metadata:

Eric Raes
Principal Investigator
CSIRO Oceans and Atmosphere Hobart Tasmania AU

Who else was associated with the resource:

Publisher
Dave Watts
OBIS Australia Data Manager
CSIRO Oceans and Atmosphere Castray Esplanade 7000 Hobart Tasmania AU +61 3 6232 5062
http://www.obis.org.au

Geographic Coverage

Western Australia coast

Bounding Coordinates South West [-31.6, 112], North East [-13.06, 125.06]

Temporal Coverage

Start Date / End Date 2012-09-07 / 2012-09-14

Project Data

The Australian Microbiome Initiative (https://www.australianmicrobiome.com) is an Australian wide collaboration founded on two established Bioplatforms Australia framework data initiatives: Marine Microbes and Biomes of Australian Soil Environments (BASE).

Title Australian Microbiome
Funding This nationally-inclusive and collaborative initiative supported by core partners Bioplatforms Australia and the Integrated Marine Observing System (IMOS) through the Australian Government’s National Collaborative Research Infrastructure Strategy (NCRIS), Parks Australia through the Bush Blitz program funded by the Australian Government and BHP, and the CSIRO, and led by researchers from various organisations across Australia.

The personnel involved in the project:

Point Of Contact
Andrew Bissett

Sampling Methods

Samples are typically from Niskin bottles from CTD's.

Study Extent Marine waters of Australia and adjacent seas

Method step description:

  1. The methods and procedures for the denoised data published here are described at https://data.bioplatforms.com/organization/pages/australian-microbiome/amplicon-datatypes

Bibliographic Citations

  1. Eric J. Raes , Levente Bodrossy, Jodie van de Kamp, Andrew Bissett, Anya M. Waite (2017) Marine bacterial richness increases towards higher latitudes in the eastern Indian Ocean Limnology and Oceanography Letters 3, 2017, 10–19 doi:10.1002/lol2.10058
  2. Raes, EJ,Waite, AM,McInnes, AS,Olsen, H,Nguyen, HM (2014) Changes in latitude and dominant diazotrophic community alter N2 fixation. Marine Ecology Progress Series 516 pp85-102. doi:10.3354/meps11009
  3. Raes, Eric J.,Bodrossy, Levente,Van de Kamp, Jodie,Holmes, Bronwyn,Hardman-Mountford, Nick (2016) Reduction of the Powerful Greenhouse Gas N2O in the South-Eastern Indian Ocean. PLOS ONE 11 ppe0145996-. doi:10.1371/journal.pone.0145996

Additional Metadata

marine, harvested by iOBIS

Alternative Identifiers http://ogc-act.csiro.au/ipt/resource?r=bioplatforms_mm_ss2012_t06